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57 items found for "RNA-seq"
- From DNA day to GPCR genomics
examines an organism's entire DNA or genome, including its genes, regulatory elements, and non-coding DNA sequences Genomics, in turn, played a crucial role in the discovery and sequencing of the beta-adrenergic receptor worth noting that the total count of GPCR genes in the human genome is still being refined as genome sequencing Advances in genomic technologies, such as genome-wide association studies and next-generation sequencing
- GPCRs are not simple on-off switches: deep dive into GPCR-ligand interactions
Moreover, they have the potential to enhance target selectivity, which can arise from greater sequence Agonist binding to GPCRs doesn't always trigger all associated events sequentially.
- 📰 GPCR Weekly News, February 26 to March 3, 2024
repertoire and structure of adhesion GPCR transcript variants assembled from publicly available deep-sequenced
- 📰 GPCR Weekly News, February 5 to 11, 2024
pharmacotherapeutic development updates Methods & Updates in GPCR Research GPCR-BERT: Interpreting Sequential
- 📰 Breaking Down the Latest GPCR Discoveries: a Weekly Update (Nov 27-Dec 3, 2023)
expression GPCR molecular dynamics forecasting using recurrent neural networks A method for multiple-sequence-alignment-free
- Targeting Intracellular Allosteric Sites in GPCRs
Moreover, they have the potential to enhance target selectivity, which can arise from greater sequence
- 📰 GPCR Weekly News, June 19 to 25, 2023
GPCRs in Neuroscience Whole genome sequencing across clinical trials identifies rare coding variants Octopus 3.0 - Next-Day Turnaround Of Full Plasmid Sequencing Directly From Colonies Indivior to Commence
- Structural landscape of the Chemokine Receptor system
between inactive and active states are facilitated by a "microswitch network" composed of conserved sequence
- Unlocking Cell's Secrets: Spontaneous β-Arrestin-Membrane Preassociation Drives Receptor-Activation
multicolor single-molecule microscopy approach with molecular dynamics simulations, they dissected the sequence
- Artificial intelligence – faster, smarter, cheaper GPCR drug discovery
The models use a variety of data for the input, including amino acid sequences or structural data (from RoseTTAFold (Baek et al., 2021) allow the prediction of the 3D structure of a protein from the amino acid sequence GPCR-ligand interactions: ML can predict GPCR-ligand interactions based on input data of protein sequences Sanavia, Birolo, Montanucci, Turina, Capriotti & Fariselli, 2020) with intrinsic limitations (e.g. using sequence de Graaf & Bender, 2021) and 4) limit of input data can lead to a phenomenon called “the burden of sequence
- VAMP2: a crucial player in the delivery of MOR to the synapse
variants, its traffic to the membrane can be modified depending on the integrity of its bi-leucine sequence
- 📰 GPCR Weekly News, March 27 to April 4, 2023
First complete genome sequence of lumpy skin disease virus directly from a clinical sample in South India
- Glyco-sulfo hotspots in the chemokine receptor system
tyrosine sulfation in their N-terminal region which seem to be widely conserved between human and murine sequences
- Overview of adhesion GPCRs self-activation
other GPCRs in an active state, in aGPCRs the rearrangements induced by the interaction of the Stalk sequence
- 📰 GPCR Weekly News
Cardiology, Endocrinology, and Taste Pathogenic variants of the GNAS gene introduce an abnormal amino acid sequence
- TM5-TM6: structural switches that modulate the coupling of serotonin receptors to Gs or Gi
Prior to this report we did not know how different serotonin receptor subtypes which share high sequence
- The Gluopsins: Opsins without the Retinal Binding Lysine
The lysine is so conserved that it is used to define a sequence as an opsin and thus phylogenetic opsin reconstructions discard any sequence without it. The pipeline compiles and aligns sequences from public sources, reconstructs the phylogeny, prunes rogue sequences, and visualizes the resulting tree.
- High hedgehog signaling is transduced by a multikinase-dependent switch controlling the...
This effect involves the sequential and additive action of protein kinase A, casein kinase I, and the
- Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of...
RoseTTAFold web service were used with default settings to predict five structures of each protein sequence
- GPR15 expressed in T lymphocytes from RA patients is involved in leukocyte chemotaxis to the...
GPR15 is a G protein-coupled receptor (GPCR) located on chromosome 3 and has similarity in its sequence
- Lysosomal GPCR-like protein LYCHOS signals cholesterol sufficiency to mTORC1
By sequestering GATOR1, LYCHOS promotes cholesterol- and Rag-dependent recruitment of mTORC1 to lysosomes
- Regulation of pulmonary surfactant by the adhesion GPCR GPR116/ADGRF5 requires a tethered agonist...
investigate the physiological importance of autocatalytic cleavage upstream of the agonistic peptide sequence species-swapping approaches, we identified key conserved amino acids for GPR116 activation in the tethered agonist sequence
- Pepducin-mediated G Protein-Coupled Receptor Signaling in the Cardiovascular System
agonist outcomes in various primary and clonal cell systems, with even small changes in amino acid sequence
- Structural dynamics of Smoothened (SMO) in ciliary membrane and its interaction with membrane lipids
cholesterols with definite sites and domains within SMO and relate them with known cholesterol-binding sequence
- Induced Human Regulatory T Cells Express the Glucagon-like Peptide-1 Receptor
Through multimodal single-cell CITE- and TCR-sequencing, we detected GLP-1R expression in 29–34% of the
- Actions of Parathyroid Hormone Ligand Analogues in Humanized PTH1R Knockin Mice
Divergence, however, in the amino acid sequences of rodent and human PTH receptors (rat and mouse PTH1Rs
- Accelerating GPCR Drug Discovery With Conformation-Stabilizing VHHs
GPCRs are divided into six classes based on amino acid sequence similarities, but only four of the classes
- HBx induces hepatocellular carcinogenesis through ARRB1-mediated autophagy to drive the G 1/S cycle
subunit type 3; PHHs: primary human hepatocytes; RB1: RB transcriptional corepressor 1; SQSTM1/p62: sequestosome