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392 items found for "Bing Li"

  • AlphaFold2 versus experimental structures: evaluation on G protein-coupled receptors

    many aspects including the assembly of the extracellular and transmembrane domains, the shape of the ligand-binding pockets, and the conformation of the transducer-binding interfaces.

  • Self-docking and cross-docking simulations of G protein-coupled receptor-ligand complexes

    Self-docking and cross-docking simulations of G protein-coupled receptor-ligand complexes: Impact of ligand type and receptor activation state G protein-coupled receptors (GPCR) are the largest family of Ligand discovery aimed at identification of chemical tools and drug leads is aided by molecular docking Likewise, the relative importance of receptor activation state and ligand function differences have also after ligand placement.

  • G protein-coupled receptors that influence lifespan of human and animal models

    Humanity has always sought to live longer and for this, multiple strategies have been tried with varying In this sense, G protein-coupled receptors (GPCRs) may be a good option to try to prolong our life while this way, we present the analysis of a series of GPCRs whose activity has been shown to affect the lifespan Our compilation of data revealed that the mechanisms most involved in the role of GPCRs in lifespan are antagonist drugs, depending on the beneficial or harmful effects of each GPCR, in order to prolong people's lifespan

  • The complicated lives of GPCRs in cardiac fibroblasts

    October 2022 "The role of different G protein-coupled receptors (GPCRs) in the cardiovascular system is well understood in cardiomyocytes and vascular smooth muscle cells (VSMCs). In the former, stimulation of Gs-coupled receptors leads to increases in contractility, whereas stimulation of Gq-coupled receptors modulates cellular survival and hypertrophic responses. In VSMCs, stimulation of GPCRs also modulates contractile and cell growth phenotypes. Here, we will focus on the relatively less well-studied effects of GPCRs in cardiac fibroblasts, focusing on key signaling events involved in the activation and differentiation of these cells. We also review the hierarchy of signaling events driving the fibrotic response and the communications between fibroblasts and other cells in the heart. We discuss how such events may be distinct depending on where the GPCRs and their associated signaling machinery are localized in these cells with an emphasis on nuclear membrane-localized receptors. Finally, we explore what such connections between the cell surface and nuclear GPCR signaling might mean for cardiac fibrosis." Read more at the source #DrGPCR #GPCR #IndustryNews

  • Newly launched antibody libraries put hard-to-drug targets within reach

    November 2021 "Target class-specific libraries mean you need to screen less to identify high-quality Antibody developers are increasingly utilising antibody libraries to derive high-quality, drug-like biologics As a result, most approved library-derived antibodies originate from just three libraries. To target hard-to-drug targets like G protein-coupled receptors (GPCRs), more libraries, including better and more targeted libraries, are needed."

  • Verily links up with Sosei Heptares for GPCR drug discovery

    January 2022 "G-protein-coupled receptors’ star has been on the rise in biotech in recent years as researchers have discovered the vast potential for GPCR-targeting drugs in treating a range of health conditions, from cancer and genetic disorders to inflammation and metabolic imbalances. Among those hitching their wagons to that star are Verily and Sosei Heptares, which have struck a research agreement to discover new GPCR targets that’ll fuel the development of potential drug candidates. The financial details of the strategic collaboration weren’t released, but Sosei Heptares’ past two team-ups in GPCR-based drug discovery have clocked in at $1 billion—with Genentech—and, just last November, $2.6 billion in a partnership with Neurocrine." Read more at the source #DrGPCR #GPCR #IndustryNews

  • Molecular basis for variations in the sensitivity of pathogenic rhodopsin variants to 9-cis-retinal

    September 2022 "Over 100 mutations in the rhodopsin gene have been linked to a spectrum of retinopathies Evaluation of the observed shifts relative to thermodynamic estimates for the coupling between binding from computational modeling suggest that many of the least sensitive variants also directly compromise binding

  • Canonical chemokine receptors as scavenging “decoys”

    receptors (CKRs) that signal via Gαi and 4 official atypical chemokine receptors (ACKRs) which engage in ligand Indeed, ACKRs behave as scavenging “decoys” in order to either limit chemokines spatial availability them from in vivo sites, while maintaining the responsiveness of canonical G protein-coupled CKRs that bind to the same ligand(s) (Nibbs, R. binding.

  • Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling

    removes the inhibitory GAIN domain on the extracellular side of receptor and releases a stalk peptide to bind The structures reveal distinctive ligand engaging model and activation conformations of GPR110. This is also where Gq/Gs bind the receptor through both hydrophobic and polar interaction, while Gi/G12

  • Third Rock pushes newest fund over $1B line as it marks 15 years in venture capital

    June 2022 "June 15, 2022 06:30 AM EDT - In 2016, Abbie Celniker was promoted to partner at Third Rock Ventures as the firm raised just over $600 million for its fourth fund. Since then, Celniker has helped usher in an additional fund and headed a few startups as interim CEO. Coming on its 15th year, Third Rock Ventures announced its sixth fund today — and largest one by far — at a whopping $1.1 billion. Adding it all up, Third Rock has raised $3.8 billion since its inception. That money has gone to some 60 biotechs, much of it as early funding." Read more at the source #DrGPCR #GPCR #IndustryNews

  • 📰 GPCR Weekly News, February 26 to March 3, 2024

    Sandra Berndt, Ines Liebscher, and Susanne Horn et. al for their for their research on adhesion GPCR Hoare, you’ll learn how to analyze your data like a pro. Stay tuned for more information. Dr. to cellular signaling GPR101: Modeling a constitutively active receptor linked to X-linked acrogigantism Webinars March 13 - 15 | Biologics 2024 March 13 - 15 | 9th German Pharm-Tox Summit March 23 - 24, 2024 | Ligand Recognition and Molecular Gating Seminar March 24 - 29, 2024 | Ligand Recognition and Molecular Gating

  • Do You Believe AI Could Accelerate Drug Discovery?

    modeled binding sites. Lyu et al. prospectively docked ultra-large libraries of molecules against unrefined AF2 models of the Moreover, advanced AI models like AlphaFold3, which can predict complex protein-molecule interactions This proprietary nature limits direct access to the model and imposes a cap on daily predictions. AlphaFold2 structures guide prospective ligand discovery.

  • Disentangling bias between G q, GRK2, and arrestin3 recruitment to the M 3 muscarinic acetylcholine

    seven agonists to induce G protein, G protein-coupled receptor kinase 2 (GRK2), as well as arrestin3 binding In order to avoid interference between these interactions, we studied GRK2 binding in the presence of inhibitors of Gi and Gq proteins and analyzed arrestin3 binding to prestimulated M3 receptors to avoid the agonists for G protein- and GRK2-M3R interaction was the same, suggesting that G protein and GRK2 binding to M3R requires similar receptor conformations, whereas requirements for arrestin3 binding to M3R are

  • In Vitro and In Silico Characterization of Kurarinone as a Dopamine D 1A Receptor Antagonist and ...

    Radioligand binding assays revealed considerable binding of kurarinone on D1R, D2LR, and D4R. Molecular docking displayed low binding energies during the intermolecular interactions of kurarinone with the key residues of the deep orthosteric binding pocket and the extracellular loops of D1R, D2LR , and D4R, validating substantial binding affinities to these prime targets.

  • Embark on a GPCR Adventure: Your Weekly Research Expedition! | Oct 21-27, 2024

    , Brian Bender , Chris De Graaf   for their excellent work on Comparative Study of Allosteric GPCR Binding Sites and Their Ligandability Potential Today, we started the Principles of Pharmacology II   course Targeting G Protein-Coupled Receptors Olfactive Biosolutions Establishes Scientific Advisory Board GLP-1s like signaling-competent receptors GPCRs in Neuroscience Astrocyte Gi-GPCR signaling corrects compulsive-like Sites and Their Ligandability Potential Molecular Dynamics (MD) Simulations Provide Insights into the

  • 📰 GPCR Weekly News, December 18 to 31, 2023

    GPCR University's live Zoom sessions hosted by Dr. Terry Kenakin. The cost is $299 and includes: All 4 live Zoom sessions ( 4x 1 hour lecture + 30 mins Q&A) Complimentary Adhesion GPCRs Latrophilin, an adhesion GPCR with galactose-binding lectin domain involved in the innate Methods to Measure Receptor-Ligand Interactions How accurately can one predict drug binding modes using Morgan Healthcare Conference Andrew Hopkins appointed CBE by HM King Charles III Voyager Therapeutics

  • Exciting GPCR Events for Next Year! + GPCR Weekly Rocket Launch ⦿ Oct 28 - Nov 3, 2024

    🚀✨ This Week’s Highlights: Congrats to: Ya-Tzu Li , our notable contributor, for her superb undergrad Job listings for candidates and positions to connect! Exciting event listings to keep you on your toes  Direct line to all the cool cats in the GPCR community Big Update! From 2025, only Premium Members will have access to Classified GPCR News. of spatial, temporal and ligand bias of G protein-coupled receptors Ligand bias at the muscarinic acetylcholine

  • Molecular mechanism of allosteric modulation for the cannabinoid receptor CB1

    These structures show that ZCZ011 binds to an extrahelical site in the transmembrane 2 (TM2)-TM3-TM4 In contrast, ORG27569, a negative allosteric modulator (NAM) of CB1, also binds to the TM2-TM3-TM4 surface

  • 📰 GPCR Weekly News, May 15 to 21, 2023

    If you are interested in giving a talk, contact us at Hello@DrGPCR.com, and if you would like to present GPCR Activation and Signaling Monitoring the Reversibility of GPCR Signaling by Combining Photochromic Ligands Gαs slow conformational transition upon GTP binding and a novel Gαs regulator. GPCRs in Neuroscience Conformationally Selective 2-Aminotetralin Ligands Targeting the alpha2A- and alpha2C-Adrenergic (May 22 - 26, 2023) 2nd LEAPS Meets Life Sciences Conference.

  • Regulators of G-protein signaling: essential players in GPCR signaling

    contain a range of other structural motifs that are critical for their function, including the G protein-binding between RGS proteins and GPCRs is mediated by a range of structural motifs, including the G protein-binding RGSs bind to GTP-bound Gα to accelerate GTP hydrolysis reducing the activity of the Gα subunit and resulting Liu-Chen, and J.R.

  • Structural insights into adhesion GPCR ADGRL3 activation and Gq, Gs, Gi, and G12 coupling

    is the removal of the inhibitory GAIN domain and the dipping of the cleaved stalk peptide into the ligand-binding The structures reveal unique ligand-engaging mode, distinctive activation conformation, and key mechanisms

  • Activation of the human chemokine receptor CX3CR1 regulated by cholesterol

    August 2022 "As the only member of the CX3C chemokine receptor subfamily, CX3CR1 binds to its sole endogenous ligand CX3CL1, which shows notable potential as a therapeutic target in atherosclerosis, cancer, and Here, we present two cryo-electron microscopy structures of CX3CR1-Gi1 complexes in ligand-free and CX3CL1

  • Endosomal parathyroid hormone receptor signaling

    protein-coupled receptors (GPCRs) activation assumes that stimulation of heterotrimeric G protein signaling upon ligand binding occurs solely at the cell surface and that duration of the stimulation is transient to prevent

  • Targeting CXCR1 and CXCR2 receptors in cardiovascular diseases

    activated by these G protein-coupled receptors based on several factors, including the nature of the ligand , its concentration, and the binding sites with the receptor, levels of the receptor, cell type, and These effects include reducing the atherosclerotic plaque area, improving the serum lipid profile, attenuation encouraging results, testing CXCR1/2 inhibitors in clinical trials could be of a great importance to limit

  • Targeting CXCR1 and CXCR2 receptors in cardiovascular diseases

    activated by these G protein-coupled receptors based on several factors, including the nature of the ligand , its concentration, and the binding sites with the receptor, levels of the receptor, cell type, and These effects include reducing the atherosclerotic plaque area, improving the serum lipid profile, attenuation encouraging results, testing CXCR1/2 inhibitors in clinical trials could be of a great importance to limit

  • G protein coupling and activation of the metabotropic GABAB heterodimer

    microscopy studies revealed a drastic conformational change upon activation and a unique G protein (GP) binding However, little is known about the mechanism for GP coupling and activation for class C GPCRs.

  • The regulation of PKA signaling in obesity and in the maintenance of metabolic health

    PKA facilitates the actions of hormones, neurotransmitters and other signaling molecules that bind G-protein Neural PKA signaling is regulated by afferent and peripheral efferent signals that link specific neural cell populations to the regulation of metabolic processes in adipose tissue, liver, pancreas, adrenal While limited, human studies infer differential regulation of the PKA system in obese compared to lean

  • Artificial intelligence – faster, smarter, cheaper GPCR drug discovery

    screening, ligand binding assays, signaling assays, cell imaging, protein structure determination, and docking and virtual screening can efficiently analyze large databases of compounds and predict their binding De novo drug design: AI algorithms can generate new molecules with desired properties, such as binding Predicting GPCR properties: AI models can predict various properties of GPCRs, such as ligand binding Automated tools for researchers: AI solutions which bring together theoretical, computational, and experimental

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